About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161902128_161902212_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161902128 - 161902212
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTTCTCTCTATT
Flanking Amino Acid:
DTSRFHEETHFFEGQAREYY
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
77.8
0.62
0.8
78.5
28.7
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
53.3
0.18
1.8
77.39
38.9

Associated Gene:

Gene:
IL1RL1
Ensembl Gene ID:
ENSAPLG00000004919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031548
161900429 - 161913020
12592
ENSAPLT00000022891
161886422 - 161913020
26599
ENSAPLT00000020032
161887534 - 161913020
25487
ENSAPLT00000005088
161886497 - 161914849
28353
ENSAPLT00000039490
161886497 - 161913020
26524