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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161906996_161907082_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161906996 - 161907082
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTATTTGCAGCC
Flanking Amino Acid:
KNATMIQWYKDCRPLHGERY
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
84.3
0.77
0.8
76.5
37.6
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
42.8
-0.5
2.2
58.68
40.7

Associated Gene:

Gene:
IL1RL1
Ensembl Gene ID:
ENSAPLG00000004919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022891
161886422 - 161913020
26599
ENSAPLT00000020032
161887534 - 161913020
25487
ENSAPLT00000005088
161886497 - 161914849
28353
ENSAPLT00000039490
161886497 - 161913020
26524
ENSAPLT00000031548
161900429 - 161913020
12592