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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161907252_161907556_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161907252 - 161907556
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCATTTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CATTTCTTAAAG
Flanking Amino Acid:
DSGNYTCVTHYPNNSTKEFN
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.5
37.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74
0.54
1
74.7
33.8
Minor 5ss
37
-1.5
2.7
44
38.5
Minor BPS
65.9
0.36
1.5
65.42
42.2

Associated Gene:

Gene:
IL1RL1
Ensembl Gene ID:
ENSAPLG00000004919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005088
161886497 - 161914849
28353
ENSAPLT00000039490
161886497 - 161913020
26524
ENSAPLT00000031548
161900429 - 161913020
12592
ENSAPLT00000022891
161886422 - 161913020
26599
ENSAPLT00000020032
161887534 - 161913020
25487