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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161909824_161912875_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
161909824 - 161912875
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.9
0.52
0.9
72.5
37.7
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
IL1RL1
Ensembl Gene ID:
ENSAPLG00000004919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039490
161886497 - 161913020
26524
ENSAPLT00000031548
161900429 - 161913020
12592
ENSAPLT00000022891
161886422 - 161913020
26599
ENSAPLT00000020032
161887534 - 161913020
25487