About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161936422_161936974_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161936422 - 161936974
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTTTGTTTATTC
Flanking Amino Acid:
ILGRDDLPGEDMVSVADETL
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
90.8
0.92
0.7
89
27.8
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
50.3
-0
2
65.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004854
161936004 - 161950429
14426