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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161939144_161941254_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161939144 - 161941254
Intron Length:
2111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATCTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTGTCATCT
Flanking Amino Acid:
YMSRIFARPYEEETSYDGRP
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72
0.49
0.9
68.5
36.8
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
44.5
-0.3
2.3
66.97
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004854
161936004 - 161950429
14426