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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161941994_161942793_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161941994 - 161942793
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAAAA
Flanking Amino Acid:
ISRDVILTVAVSPPKKPPEI
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.1
0.52
0.9
73.2
36.6
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
61
0.34
1.8
72.99
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004854
161936004 - 161950429
14426