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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161944578_161947519_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161944578 - 161947519
Intron Length:
2942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACG
Flanking Amino Acid:
TTAFLSLLIAEKYEAYDVMF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.4
0.73
0.7
81.3
23.9
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
87.8
1.05
1
87.23
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004854
161936004 - 161950429
14426