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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161947590_161950244_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161947590 - 161950244
Intron Length:
2655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AAAACACTAATT
Flanking Amino Acid:
KFNCLSWHNVGNITAKTLLS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
84
0.76
0.7
80.6
24.7
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
47
-0.1
1.9
64.03
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004854
161936004 - 161950429
14426