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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161959936_161961004_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161959936 - 161961004
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
NSCHPFLGEKASDGKIYDAY
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004621
161957825 - 161976794
18970