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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161963905_161966390_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161963905 - 161966390
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGTATTTAAAT
Flanking Amino Acid:
PKNNTIEVELGSHVVMECNV
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
59.7
0.38
1.7
73.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004621
161957825 - 161976794
18970