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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161966457_161967475_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161966457 - 161967475
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTGTCCAGAGAT
Flanking Amino Acid:
VSRTMSLVVKESPLQMRPEF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.3
0.66
0.9
81.2
30.9
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
47.2
-0.1
2
71.7
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004621
161957825 - 161976794
18970