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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161969565_161971616_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161969565 - 161971616
Intron Length:
2052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGACCTGACTT
Flanking Amino Acid:
EDSGLYECEVRGLNRSNQKT
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.7
0.78
0.8
79.2
32.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
49.7
0.06
1.8
68.01
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004621
161957825 - 161976794
18970