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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161974022_161976684_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
161974022 - 161976684
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCCTTCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.6
0.8
0.8
80.3
36.7
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
70.1
0.71
1.3
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004621
161957825 - 161976794
18970