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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162018118_162020474_R

Intron Information:

Intron Rank:
147125
Intron Class:
major
Intron Phase:
Intron Coordinates:
162018118 - 162020474
Intron Length:
2357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CATCCCTTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATCCCTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.5
0.46
0.9
62.6
38.1
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
63
0.4
1.7
70.06
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026467
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029681
162015825 - 162021452
5628