Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162035016_162037324_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162035016 - 162037324

Intron Length:

2309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

ACTCTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

ATCTCCCCACTC

Flanking Amino Acid:

EDSGVYVCTRRNNSYCAEVS

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.9

33.5

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

68.9

0.43

0.9

61.3

34.5

Minor 5ss

33.9

-1.8

3.5

49.9

46.5

Minor BPS

44.9

-0.4

57.55

41.5

Associated Gene:

Gene:

IL1R2

Ensembl Gene ID:

ENSAPLG00000004200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029108

162027884 - 162037770

9887

ENSAPLT00000004311

162027884 - 162039420

11537