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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162068261_162069005_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162068261 - 162069005
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATCTCACTGATT
Flanking Amino Acid:
KPYHKFMAFKSFGELVHKPL
Intron Amino Acid Position:
1213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.5
0.75
0.9
76.8
37.1
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
49.3
0.03
1.9
71.33
39.6

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569