About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162072614_162076437_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162072614 - 162076437
Intron Length:
3824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTTA
5'SS Class:
major
3'SS Sequence:
TCTCTGTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
ATAAACTAACCT
Flanking Amino Acid:
EGLNVLVTISGKKNKLRVYY
Intron Amino Acid Position:
1134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
70.8
35.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
62.3
0.28
1.1
57.4
43.2
Minor 5ss
39.8
-1.1
3.4
52
47
Minor BPS
45.4
-0.2
2.1
65.17
44.7

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569