About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162080538_162084298_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162080538 - 162084298
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
ATTTACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTCATTAATA
Flanking Amino Acid:
SKEGTLIVRQTQSASNTLQK
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.3
0.64
0.9
71.3
38.5
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
73.3
0.73
1.5
80.55
35.3

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025761
162065175 - 162196289
131115