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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162083109_162084298_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162083109 - 162084298
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGACAA
U12 Branch Point Sequence:
GTTTTTTCTACA
Flanking Amino Acid:
SKEGTLIVRQSTVDKKRASH
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
46.8
-0.2
1
50.7
34.3
Major PPT
89.4
0.89
0.7
84.3
30.8
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
51.2
0.03
1.8
67.63
38.5

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038301
162065175 - 162181743
116569
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000045028
162065175 - 162196289
131115