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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162084420_162085008_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
162084420 - 162085008
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTTAGTTCT
5'SS Class:
major
3'SS Sequence:
GTCTGGCAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATCCTGATTA
Flanking Amino Acid:
STSGPDDVRAVSTLNLSNGE
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.3
66.5
39.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
53.5
0.08
1
47.6
39.7
Minor 5ss
41.2
-1
2.7
53.6
43
Minor BPS
55
0.15
1.7
65.03
41.6

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569
ENSAPLT00000036557
162065175 - 162181743
116569