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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162086586_162087274_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162086586 - 162087274
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCACATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
GTCTTGGCACAT
Flanking Amino Acid:
SGSGERFRMRSSSKSEGSPS
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
50
0
1.5
63.1
44.5
Major PPT
66.8
0.38
1
59.7
41
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
31.3
-1.3
2.5
49.04
44.3

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569