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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162088476_162089389_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162088476 - 162089389
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTAACACAACC
Flanking Amino Acid:
RSDSDEVPPRVPVRTTSRSP
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.4
0.59
1
76
32.9
Minor 5ss
33.5
-1.9
3.2
40.4
45.5
Minor BPS
49.1
-0
2
70.2
40.2

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115