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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162089621_162091632_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162089621 - 162091632
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCTTGTAAG
Flanking Amino Acid:
PALQRPMEPQVQWSHLASLK
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.4
0.44
1.2
75.7
38.5
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
49.9
-0.1
2
65.38
42.4

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000045028
162065175 - 162196289
131115
ENSAPLT00000038301
162065175 - 162181743
116569