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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162091795_162095063_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162091795 - 162095063
Intron Length:
3269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTAGACTTAACC
Flanking Amino Acid:
HYEPAERAREVEERFRKTNQ
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
76.4
0.59
0.9
69.7
41.2
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
61.6
0.34
1.7
68.13
43.1

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038301
162065175 - 162181743
116569
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115