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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162095310_162095978_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162095310 - 162095978
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
CGTTCTCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
ATGTCTTGAATT
Flanking Amino Acid:
QLLQEQAMLLEYRWREMEEH
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59
39.9
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
66.7
0.38
1
66.7
33.3
Minor 5ss
30.5
-2.2
3.4
38
41.5
Minor BPS
67.6
0.63
1.4
79.02
37.5

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000045028
162065175 - 162196289
131115