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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162109169_162111070_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162109169 - 162111070
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTTCTGTTCACT
Flanking Amino Acid:
TAIEMAEGAPPLCDMHPMRA
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
38.8
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
88.4
0.86
0.7
81.3
30.8
Minor 5ss
36.2
-1.6
3.3
53.7
43.8
Minor BPS
50.6
0.1
2.4
80.65
41.4

Associated Gene:

Gene:
MAP4K4
Ensembl Gene ID:
ENSAPLG00000003218
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038301
162065175 - 162181743
116569
ENSAPLT00000036557
162065175 - 162181743
116569
ENSAPLT00000025761
162065175 - 162196289
131115
ENSAPLT00000046859
162065175 - 162181743
116569
ENSAPLT00000003379
162065108 - 162196289
131182
ENSAPLT00000045028
162065175 - 162196289
131115