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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162222487_162223923_F

Intron Information:

Intron Rank:
124781
Intron Class:
major
Intron Phase:
Intron Coordinates:
162222487 - 162223923
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTGTCCTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
63.9
0.41
1.8
75.38
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042192
162222255 - 162224820
2566