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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162239554_162242218_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162239554 - 162242218
Intron Length:
2665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGT
5'SS Class:
major
3'SS Sequence:
CTCTTTTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
DKVNSATFGKLIRLVFPGLG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64.5
46.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.8
0.69
0.8
81
29.9
Minor 5ss
38.5
-1.3
3.4
58
46.3
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646