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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162242281_162243766_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162242281 - 162243766
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGTT
5'SS Class:
major
3'SS Sequence:
TTTTATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATCT
Flanking Amino Acid:
TRRLGTRGSARYHYDGIAIK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.4
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
78.1
36.1
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
68.7
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646