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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162243854_162246903_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162243854 - 162246903
Intron Length:
3050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TGTCTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCACTTTCCATG
Flanking Amino Acid:
CFLLSEKKYLRHSSPGEVMA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.6
0.51
1
65.2
41.1
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
37.7
-1.1
1.7
32.39
35.1

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646