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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162249777_162250221_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162249777 - 162250221
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAACA
Flanking Amino Acid:
QVVRMEELDKVEGFIVSFWK
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.4
0.46
1
66.6
39.5
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
74.5
0.77
1.5
80.89
33.6

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646