About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162251164_162252766_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162251164 - 162252766
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGATAT
Flanking Amino Acid:
PVLLQTTKYKEVTLFIKRLR
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.5
0.84
0.7
83.7
24.3
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
43.4
-0.4
2.1
66.42
42.9

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646