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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162258051_162259238_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162258051 - 162259238
Intron Length:
1188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
TCTCTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
STNLQAFIIEPSRNKEEFRK
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
86
0.81
0.7
80.7
30
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646