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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162259354_162263028_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162259354 - 162263028
Intron Length:
3675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTTTAAAT
Flanking Amino Acid:
AMTLNYADSFGSWHLFNLLL
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.7
0.49
0.9
64.3
40.8
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
85.3
1.19
1.1
97.3
26.5

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646