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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162263321_162266688_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
162263321 - 162266688
Intron Length:
3368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATAA
5'SS Class:
major
3'SS Sequence:
TTCTAACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
72.4
27.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.5
0.71
0.8
78
35.1
Minor 5ss
31.2
-2.2
3.1
37.8
47
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
RFX8
Ensembl Gene ID:
ENSAPLG00000022405
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019198
162236408 - 162267053
30646