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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162270098_162280475_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
162270098 - 162280475
Intron Length:
10378

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTT|GCAGGTAAC
5'SS Class:
major
3'SS Sequence:
AGAAAAAATGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
GTGCACAGAAAA
Flanking Amino Acid:
LTLPEADGNFFDPEDPRCAR
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.4
68.3
39.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
49.4
-0
1.1
38.3
42.7
Minor 5ss
26.9
-2.7
4
41.6
39.5
Minor BPS
41.4
-0.6
1.8
50.72
39.2

Associated Gene:

Gene:
CREG2
Ensembl Gene ID:
ENSAPLG00000026852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046692
162268644 - 162283993
15350