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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162303126_162303657_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162303126 - 162303657
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTTCCTGACA
Flanking Amino Acid:
LDVIKALGYWHQKREMKTHA
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.5
0.66
0.9
76.3
32.4
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
62.5
0.39
1.7
74.65
36.8

Associated Gene:

Gene:
RNF149
Ensembl Gene ID:
ENSAPLG00000003131
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024870
162289970 - 162307414
17445