About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162318604_162319375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162318604 - 162319375
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
SPLTSPQQTQLLGELEKDPK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
CNOT11
Ensembl Gene ID:
ENSAPLG00000002957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002995
162313535 - 162320284
6750