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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162379357_162379784_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162379357 - 162379784
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTCTTTTAAAA
Flanking Amino Acid:
SGVAGLDFGKSREQIKESLW
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.4
0.8
0.8
80.1
31.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
TBC1D8
Ensembl Gene ID:
ENSAPLG00000000969
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024218
162347809 - 162394579
46771
ENSAPLT00000001210
162347809 - 162394058
46250