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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162395100_162395606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
162395100 - 162395606
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATACTGATACCA
Flanking Amino Acid:
VTYVPVTTFKGLQTVNVDEN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
39.7
-0.7
2.3
52.63
39.1

Associated Gene:

Gene:
RPL31
Ensembl Gene ID:
ENSAPLG00000016431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017149
162395068 - 162399055
3988