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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162395720_162397403_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162395720 - 162397403
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTTCCTTTACT
Flanking Amino Acid:
LNKAVWAKGIRNVPYRIRVR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.4
39.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.8
75
34
Minor 5ss
37.7
-1.4
3.2
52.9
44.2
Minor BPS
75.5
0.88
1.6
86.57
39.1

Associated Gene:

Gene:
RPL31
Ensembl Gene ID:
ENSAPLG00000016431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017149
162395068 - 162399055
3988