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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162397530_162398948_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162397530 - 162398948
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGCGCT
5'SS Class:
major
3'SS Sequence:
TTGTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GGTTCAATAAAT
Flanking Amino Acid:
TINIHKRIHGVGFKKRAPRA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.7
42.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72.5
0.51
0.9
65.6
41
Minor 5ss
41
-1
3.4
57.8
46.4
Minor BPS
50.8
0.1
2
73.96
41.5

Associated Gene:

Gene:
RPL31
Ensembl Gene ID:
ENSAPLG00000016431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017149
162395068 - 162399055
3988