About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162402884_162404085_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162402884 - 162404085
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
QQHQQQRYLQVQTPSPLHNE
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.2
0.68
0.8
75.3
34.1
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893