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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162404273_162405498_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162404273 - 162405498

Intron Length:

1226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTATGTGAT

5'SS Class:

major

3'SS Sequence:

CTTTCTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TTTTTCTTGATT

Flanking Amino Acid:

SDLSMAGSQAKYSQNQQMFQ

Intron Amino Acid Position:

696

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

76.9

31.7

Major BPS

83.8

0.84

73.6

41.8

Major PPT

83.8

0.76

0.7

76.8

31.9

Minor 5ss

42.2

-0.9

3.2

57.4

41.7

Minor BPS

83.2

1.13

0.9

94.4

25.5

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893