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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162405592_162406347_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

162405592 - 162406347

Intron Length:

756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCGG

5'SS Class:

major

3'SS Sequence:

TTCCATGTGCAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CTTTCTTCCATG

Flanking Amino Acid:

AAGCSHDQQLRLLLSQPIQP

Intron Amino Acid Position:

665

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

55.2

Major BPS

72.7

0.56

30.1

Major PPT

56.2

0.14

1.2

55.6

43.5

Minor 5ss

28.8

-2.4

3.4

38.1

46.9

Minor BPS

48.3

-0.2

58.73

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893