Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162407572_162413541_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162407572 - 162413541

Intron Length:

5970

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTTAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

ATGTCAATAAAA

Flanking Amino Acid:

LCLVQDSSVQMFLQQPTVSL

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.5

32.2

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

87.5

0.84

0.7

79.8

32.2

Minor 5ss

33.7

-1.9

3.1

42.4

45.1

Minor BPS

49.4

-0

65.8

39.7

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017044

162401785 - 162452677

50893

ENSAPLT00000032733

162401785 - 162447870

46086