About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162413689_162418953_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
162413689 - 162418953
Intron Length:
5265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTATTATAAAG
Flanking Amino Acid:
LPSQPAPLAQFSAQFSMFQT
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
70.9
41.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
36
-1.6
2.6
41.8
44.7
Minor BPS
47
-0.3
1.8
53.62
41.4

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893