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Intron Name: Anas_platyrhynchos_platyrhynchos_1_162420194_162420884_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

162420194 - 162420884

Intron Length:

691

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGATGA

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGCAAT

U12 Branch Point Sequence:

GATGCAATAGCT

Flanking Amino Acid:

SSEVVSSALKDSGSSLDPEQ

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.9

38.8

Major BPS

0.07

1.4

62.5

41.7

Major PPT

75.4

0.57

73.5

41.9

Minor 5ss

36.2

-1.6

3.2

47.9

47.5

Minor BPS

44.4

-0.3

2.1

64.69

44.7

Associated Gene:

Gene:

NPAS2

Ensembl Gene ID:

ENSAPLG00000016315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032733

162401785 - 162447870

46086

ENSAPLT00000017044

162401785 - 162452677

50893