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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_162420967_162421566_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162420967 - 162421566
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
EFIVCTHMVVSYADVRVERR
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.5
0.64
0.9
75.7
38.1
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
NPAS2
Ensembl Gene ID:
ENSAPLG00000016315
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032733
162401785 - 162447870
46086
ENSAPLT00000017044
162401785 - 162452677
50893